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Publikacje

Typ publikacji:Wszystko Książka Artykuł Rozdział
Lista filadelfijska:Wszystko Tak Nie  


2023
  • B. Niklas, J. Rydzewski, Bruno Lapied, W. Nowak,
    "Toward Overcoming Pyrethroid Resistance in Mosquito Control: The Role of Sodium Channel Blocker Insecticides"
    Int. J. Mol. Sci. 24(12) (2023), 10334
    DOI: https://doi.org/10.3390/ijms241210334




2022
  • J. Rydzewski, K. Walczewska-Szewc, S. Czach, W. Nowak, Kuczera Krzysztof,
    "Enhancing the Inhomogeneous Photodynamics of Canonical Bacteriophytochrome"
    J. Phys. Chem. B 126 (2022), 2647-2657
    DOI: 10.1021/acs.jpcb.2c00131




2021
  • B. Niklas, Milena Jankowska, Dalia Gordon, László Béress, Maria Stankiewicz, W. Nowak,
    " Interactions of Sea Anemone Toxins with Insect Sodium Channel—Insights from Electrophysiology and Molecular Docking Studies "
    Molecules 26 (5) (2021), 1302-1324
    DOI: : https://www.mdpi.com/1420-3049/26/5/1302

  • K. Walczewska-Szewc, W. Nowak,
    "Photo-Switchable Sulfonylureas Binding to ATP-Sensitive Potassium Channel Reveal the Mechanism of Light-Controlled Insulin Release"
    J. Phys. Chem. B 125, 48 (2021), 13111-13121
    DOI: 10.1021/acs.jpcb.1c07292




2020
  • Jakub Dąbrowski, W. Nowak, Arkadiusz Ptak,
    "How strong are hydrogen bonds in the peptide model?"
    Phys. Chem. Chem. Phys. 22 (2020), 1392-1399
    DOI: https://doi.org/10.1039/C9CP05564A

  • Eléonore Moreau, K. Mikulska-Rumińska, Mathilde Goulu, Stéphane Perrier, Caroline Deshayes, Maria Stankiewicz, Véronique Apaire-Marchais, W. Nowak, Bruno Lapied,
    "Orthosteric muscarinic receptor activation by the insect repellent IR3535 opens new prospects in insecticide-based vector control"
    Sci. Rep. 10 (2020), 1-15
    DOI: 10.1038/s41598-020-63957-x

  • K. Walczewska-Szewc, W. Nowak,
    "Structural Determinants of Insulin Release: Disordered N-Terminal Tail of Kir6.2 Affects Potassium Channel Dynamics Through Interactions With Sulfonylurea Binding Region in a SUR1 Partner"
    J. Phys. Chem. B 124, 29 (2020), 6198-6211
    DOI: 10.1021/acs.jpcb.0c02720




2019
  • Marta Stawczyk‐Macieja , Katarzyna Wertheim‐Tysarowska , Rafał Jakubowski , Aneta Szczerkowska‐Dobosz , Magdalena Krygier , Aleksandra Wilkowska , Justyna Sawicka , W. Nowak, Jerzy Bal , Roman Nowicki ,
    "A novel de novo mutation p.Ala428Asp in KRT5 gene as a cause of localized epidermolysis bullosa simplex."
    EXP DERMATOL 28(10) (2019), 1131-1134
    DOI: 10.1111/exd.13788

  • K. Mikulska-Rumińska, J. Strzelecki, W. Nowak,
    "Dynamics, nanomechanics and signal transduction in reelin repeats"
    Sci. Rep. 9 (2019), 1-13

  • Juan Francisco Carrascoza Mayén, J. Rydzewski, Natalia Szostak, Jacek Blazewicz, W. Nowak,
    "Prebiotic Soup Components Trapped in Montmorillonite Nanoclay Form New Molecules: Car-Parrinello Ab Initio Simulations"
    Life 9 (2019), 46-54
    DOI: doi:10.3390/life9020046

  • K. Walczewska-Szewc, W. Nowak,
    "Spacial models of malfunctioned protein complexes help to elucidate signal transduction critical for insulin release"
    Biosystems 177 (2019), 48-55
    DOI: https://doi.org/10.1016/j.biosystems.2018.11.001

  • Renata Gadzała-Kopciuch, Katarzyna Kwaśniewska, Agnieszka Ludwiczak, Piotr Skrzyniarz, R. Jakubowski, W. Nowak, Andrzej Wojtczak, Bogusław Buszewski,
    "Towards A New Approach for the Description of Cyclo–2,4-Dihydroxybenzoate, A Substance Which Effectively Mimics Zearalenone in Imprinted Polymers Designed for Analyzing Selected Mycotoxins in Urine"
    Int. J. Mol. Sci. 20(7) (2019), 1588-1610
    DOI: https://doi.org/10.3390/ijms20071588




2018
  • Anna Kutkowska-Kaźmierczak, Małgorzata Rydzanicz, Aleksander Chlebowski, Kamila Kłosowska-Kosicka, Adriana Mika, Jakub Gruchota, Elżbieta Jurkiewicz, Cezary Kowalewski, Agnieszka Pollak, Teresa Joanna Stradomska, Tomasz Kmieć, R. Jakubowski, Piotr Gasperowicz, Anna Walczak, Dariusz Śladowski, Ewa Jankowska-Steifer, Lech Korniszewski, Joanna Kosińska, Ewa Obersztyn, W. Nowak, Tomasz Śledziński, Andrzej Dziembowski, Rafał Płoski, 22,
    "Dominant ELOVL1 mutation causes neurological disorder with ichthyotic keratoderma, spasticity, hypomyelination and dysmorphic features"
    J. Med. Genet. 55(6) (2018), 408-414
    DOI: http://dx.doi.org/10.1136/jmedgenet-2017-105172

  • J. Rydzewski, dr inż. Rafał Jakubowski, W. Nowak, prof. Helmut Grubmueller,
    "Kinetics of Huperzine A Dissociation from Acetylcholinesterase via Multiple Unbinding Pathways"
    J. Chem. Theory Comput. 14 (6) (2018), 2843- 2851
    DOI: DOI: 10.1021/acs.jctc.8b00173

  • J. Rydzewski, W. Nowak,
    "Photoinduced Transport in an H64Q Neuroglobin Antidote for Carbon Monoxide Poisoning"
    J. Chem. Phys. 148(11) (2018), 115101-
    DOI: https://doi.org/10.1063/1.5013659




2017
  • Katarzyna Roszek, Noemi Makowska, Joanna Czarnecka, Dorota Porowińska, M. Dąbrowski, Justyna Danielewska, W. Nowak,
    "Canine Adipose‐Derived Stem Cells: Purinergic Characterization and Neurogenic Potential for Therapeutic Applications"
    J. Cell. Biochem. 118(1) (2017), 58-65
    DOI: 10.1002/jcb.25610

  • J. Rydzewski, W. Nowak,
    "Ligand diffusion in proteins via enhanced sampling in molecular dynamics"
    Phys. Life Rev. 22-23 (2017), 58- 74
    DOI: 10.1016/j.plrev.2017.03.003

  • K. Mikulska-Rumińska, A. J. Kulik, C. Benadiba, I. Bahar, G. Dietler, W. Nowak,
    "Nanomechanics of multidomain neuronal cell adhesion protein contactin revealed by single molecule AFM and SMD"
    Sci. Rep. 7 (2017), 1-11
    DOI: 10.1038/s41598-017-09482

  • Gogolińska Anna, W. Nowak,
    "OPOA : a Petri net generation algorithm for molecular dynamics analysis."
    in Ekkart Kindler, Robin Bergenthum (editor), Algorithms and tools for Petri nets : proceedings of the Workshop AWPN 2017, , Technical University of Denmark, 2017, Dania (2017), pp. 21-26
    ISBN: ISSN 1601-2321

  • J. Rydzewski, W. Nowak,
    "Rare-event sampling in ligand diffusion: Reply to comments on “Ligand diffusion in proteins via enhanced sampling in molecular dynamics”"
    Phys. Life Rev. 22-23 (2017), 82- 85
    DOI: 10.1016/j.plrev.2017.08.011

  • J. Rydzewski, W. Nowak,
    "Thermodynamics of camphor migration in cytochrome P450cam by atomistic simulations"
    Sci. Rep. 7 (2017), 7736- 7746
    DOI: https://www.nature.com/articles/s41598-017-07993-0




2016
  • W. Nowak,
    "Applications of Computational Methods to Simulations of Proteins Dynamics"
    in Editors: Leszczynski, J., Kaczmarek-Kedziera, A., Puzyn, T., G. Papadopoulos, M., Reis, H., K. Shukla, M. (editor), Handbook of Computational Chemistry , Springer, Switzerland (2016), pp. 1627-1669
    ISBN: ISBN 978-3-319-27281

  • J. Rydzewski, R. Jakubowski, prof. Giuseppe Nicosia, W. Nowak,
    "Conformational sampling of a biomolecular rugged energy landscape"
    IEEE/ACM Trans. Comput. Biol. (2016), -
    DOI: 10.1109/TCBB.2016.2634008

  • J. Rydzewski, W. Nowak,
    "Machine learning based dimensionality reduction facilitates ligand diffusion paths assessment: a case of cytochrome P450cam"
    J. Chem. Theory Comput. (2016), -
    DOI: 10.1021/acs.jctc.6b00212

  • J. Rydzewski, W. Nowak,
    "Molecular Dynamics Simulations of Large Systems in Electronic Excited States"
    in (editor), Handbook of Computational Chemistry, Springer, Netherlands (2016), pp. 1917-1941
    ISBN: 978-94-007-6169-8

  • A. Gogolińska, R. Jakubowski, W. Nowak,
    "Petri nets formalism facilitates analysis of complex biomolecular structural data"
    Rairo-Oper. Res. 50 (2016), 401-411
    DOI: http://dx.doi.org/10.1051/ro/2015043




2015
  • M. Dąbrowski, Katarzyna Roszek, J. Strzelecki, Maria Stankiewicz, W. Nowak,
    "Afm Monitoring of Elasticity Changes Accompanying Differentiation Towards Neural Cells"
    Biophys. J. Suppl. 108 (2015), 169a-169a
    DOI: http://dx.doi.org/10.1016/j.bpj.2014.11.934

  • J. Rydzewski, R. Jakubowski, W. Nowak,
    "Entropic measure to prevent energy over-minimization in molecular dynamics simulations"
    J. Chem. Phys. 143(19) (2015), 171103
    DOI: 10.1063/1.4935370

  • J. Rydzewski, W. Nowak, Giussepe Nicosia,
    "Inferring pathological states in cortical neuron microcircuits"
    J. Theor. Biol. 386 (2015), 34-43
    DOI: doi:10.1016/j.jtbi.2015.09.004

  • J. Rydzewski, W. Nowak,
    "Memetic algorithms for ligand expulsion from protein cavities"
    J. Chem. Phys. 143(12) (2015), 124101-
    DOI: 10.1063/1.4931181

  • J. Rydzewski, Wojciech Strzałka, W. Nowak,
    "Nanomechanics of PCNA: A protein-made DNA sliding clamp"
    Chem. Phys. Lett. 634 (2015), 236-242
    DOI: doi:10.1016/j.cplett.2015.06.027

  • R. Jakubowski, J. Rydzewski, W. Nowak,
    "On the role of metal ions in synaptic proteins assembly"
    Protein Sci. 24 (2015), 161-162

  • Andrzej J. Kulik, Małgorzata Lekka, Kyumin Lee, Grazyna Pyka-Fościak, W. Nowak,
    "Probing fibronectin–antibody interactions using AFM force spectroscopy and lateral force microscopy"
    BEILSTEIN J NANOTECH 6 (2015), 1164-1175
    DOI: doi:10.3762/bjnano.6.118

  • Aly Abd-Ella, Maria Stankiewicz, K. Mikulska-Rumińska, W. Nowak, Cédric Pennetier, Mathilde Goulu, Carole Fruchart-Gaillard, Patricia Licznar, Véronique Apaire-Marchais, Olivier List, Vincent Corbel, Denis Servent, Bruno Lapied,
    "The Repellent DEET Potentiates Carbamate Effects via Insect Muscarinic Receptor Interactions: An Alternative Strategy to Control Insect Vector-Borne Diseases"
    PLOS ONE 10(5) (2015), e0126406-+20
    DOI: DOI:10.1371/journal.pone.0126406




2014
  • R. Jakubowski, A. Gogolińska, Ł. Pepłowski, Piotr Skrzyniarz, W. Nowak,
    "COMPUTATIONAL STUDIES OF TTR RELATED AMYLOIDOSIS: EXPLORATION OF CONFORMATIONAL SPACE THROUGH PETRI NET-BASED ALGORITHM"
    TASK Quarterly 3 (2014), 267

  • K. Kubiak-Ossowska, Mulheran Paul, W. Nowak,
    "Fibronectin Module FNIII9 Adsorption at Contrasting Solid Model Surfaces Studied by Atomistic Molecular Dynamics"
    J. Phys. Chem. B xx (2014), yy-zz
    DOI: 10.1021/jp5020077

  • J. Strzelecki, Ł. Pepłowski, Lenartowski Robert, W. Nowak, A. Balter,
    "Mechanical transition in a highly stretched and torsionally constrained DNA"
    Phys. Rev. E. 89 (2014), 020701-1-020701-5
    DOI: 10.1103/PhysRevE.89.020701

  • K. Mikulska-Rumińska, J. Strzelecki, W. Nowak,
    "Nanomechanics of β-rich proteins related to neuronal disorders studied by AFM, all-atom and coarse-grained MD methods"
    J. Mol. Model. 20 (2014), 2144-2153
    DOI: DOI: 10.1007/s00894-014-2144-5

  • Marek Jankowski, Katarzyna Wertheim-Tysarowska, R. Jakubowski, Justyna Sota, W. Nowak, Rafal Czajkowski,
    "Novel KRT14 mutation causing epidermolysis bullosa simplex with variable phenotype"
    EXP DERMATOL 23 (2014), 684-687
    DOI: 10.1111/exd.12478

  • R. Jakubowski, Piotr Skrzyniarz, Ł. Pepłowski, W. Nowak,
    "Transthyretin Induced Amyloidosis Interactions, Mechanisms and Potent Drugs Design"
    Biophys. J. Suppl. 106 (2014), 661a
    DOI: 10.1016/j.bpj.2013.11.3659




2013
  • M. Dąbrowski, W. Nowak, prof. dr hab. Stankiewicz Maria,
    "An influence of neuroactive compounds on insect ion channels"
    Eur. Biophys. J. Biophys. Lett. Suppl. 42 (2013), 79-79
    DOI: 10.1007/s00249-013-0917-x

  • Ł. Pepłowski, Joanna Estkowska, W. Nowak,
    "Electric field effects on EGF and bFGF ligand- receptor unbinding investigated by Steered MD method"
    Eur. Biophys. J. Biophys. Lett. Suppl. 42 (Suppl 1) (2013), S94-S94
    DOI: 10.1007/s00249-013-0917-x

  • P. Miszta, S. C. Basak, R. Natarjan, W. Nowak,
    "How Computational Studies of Mosquito Repellents Contribute to the Control of Vector Born Diseases"
    Current Computer-Aided Drug Design 9(3) (2013), 300-307
    DOI: 10.2174/15734099113099990018

  • Anna Gogolińska, W. Nowak,
    "Molecular basis of lateral force spectroscopy nano-diagnostics: computational unbinding of autism related chemokine MCP-1 from IgG antibody"
    J. Mol. Model. Volume 19, Issue 11 (2013), 4773-4780
    DOI: 10.1007/s00894-013-1972-z

  • K. Mikulska-Rumińska, W. Nowak,
    "Nanomechanics of proteins related to autism spectrum disorder"
    Eur. Biophys. J. Biophys. Lett. Suppl. 42 (Suppl 1) (2013), S94
    DOI: DOI 10.1007/s00249-013-0917-x

  • K. Mikulska-Rumińska, R. Jakubowski, Ł. Pepłowski, M. Dąbrowski, A. Gogolińska, Włodzisław Duch, W. Nowak,
    "On applications of virtual atomic force microscope in studies of brain proteins"
    Eur. Biophys. J. Biophys. Lett. Suppl. 42 (Suppl 1) (2013), S93-S93
    DOI: DOI 10.1007/s00249-013-0917-x

  • D. Bielińska-Wąż, dr Wąż Piotr, prof. Clark Timothy, dr hab. Puzyn Tomasz, Ł. Pepłowski, W. Nowak,
    "Statistical properties of spectra of chloronaphthalenes"
    J. Math. Chem. 51 (2013), 857-867
    DOI: 10.1007/s10910-012-01117-4




2012
  • J. Strzelecki, M. Dąbrowski, dr Strzelecka Joanna, dr Tszydel Mariusz, K. Mikulska-Rumińska, W. Nowak, A. Balter,
    "AFM Investigation of Biological Nanostructures"
    Acta Phys. Pol. A 122 (2012), 329-332

  • W. Nowak,
    "Applications of Computational Methods to Simulations of Proteins Dynamics"
    in J. Leszczynski (editor), Handbook of Computational Chemistry, Springer , New York (2012), pp. 1127-1153
    ISBN: 978-94-007-0710-8

  • W. Duch, W. Nowak, J. Meller, G. Osiński, K. Dobosz, Dariusz Mikołajewski , Grzegorz M. Wójcik,
    "Computational Approach to Understanding Autism Spectrum Disorders"
    Computer Science 13 (2012), 47-61
    DOI: 10.7494/csci.2012.13.2.47

  • A. Jasiński, K. Mikulska-Rumińska, B. Krajnik, S. Maćkowski, W. Nowak,
    "Dynamics of Protein Elements of Hybrid Nanostructures - Molecular Dynamics Simulations of Light Harvesting Peridinin-Chlorophyll a-Protein Model "
    Acta Phys. Pol. A 122 (2012), 284-288

  • M. Dąbrowski, W. Nowak, Jankowska Milena, prof. dr hab. Stankiewicz Maria,
    "How experimental conditions can influence the effects of toxins binding to "site 3" on sodium channel - electrophysiological observations"
    Acta Neurobiol. Exp. 72 (2012), 199-199

  • K. Mikulska-Rumińska, J. Strzelecki, A. Balter, W. Nowak,
    "Nanomechanical unfolding of α-neurexin - a major component of the synaptic junction"
    Chem. Phys. Lett. 521 (2012), 134-137
    DOI: 10.1016/j.cplett.2011.11.033

  • A. Gogolińska, W. Nowak,
    "Petri Nets Approach to Modeling of Immune System and Autism"
    in Carlos A. Coello Coello, Julie Greensmith, Natalio Krasnogor, Pietro Liò, Giuseppe Nicosia, Mario Pavone (editor), Artificial Immune Systems. Lecture Notes in Computer Science., Springer, Heidelberg Dordrecht London NewYork (2012), pp. 86-99
    ISBN: ISBN 978-3-642-33756

  • A. Gogolińska, W. Nowak,
    "Petri nets approach to modeling of immune system and autism"
    Lect. Notes Comput. Sci. Artificial immune systems : 11th international conference, ICARI (2012), 86-99
    DOI: 10.1007/978-3-642-33757-4_7




2011
  • Ł. Pepłowski, Sikora Mateusz, W. Nowak, Cieplak Marek,
    " Molecular jamming—The cystine slipknot mechanical clamp in all-atom simulations "
    J. Chem. Phys. 134 (2011), 085102-085116
    DOI: doi:10.1063/1.3553801

  • Duch W, W. Nowak, Meller J , Osinski G , Dobosz K, Mikołajewski D, Wójcik G.M,
    "Consciousness and attention in autism spectrum disorders"
    in M. Bubak, M. Turala, K. Wiatr (Eds.) (editor), Proceedings of Cracow Grid Workshop – CGW’10, ACC-Cyfronet AGH, Kraków (2011), pp. 202-211
    ISBN: 978-83-61433-03-3

  • Ł. Pepłowski, R. Jakubowski, W. Nowak,
    "Molecular dynamics study of bNeurexin-Neuroligin interactions"
    Eur. Biophys. J. Biophys. Lett Volume 40, Supplement 1 (2011), S114-S114
    DOI: 10.1007/s00249-011-0734-z

  • Anna Gogolińska, W. Nowak,
    "Molecular recognition at atomic level: interaction of autism related protein MCP-1 with an antibody"
    Eur. Biophys. J. Biophys. Lett 40 (2011), S106-S106
    DOI: 10.1007/s00249-011-0734-z

  • P. Ossowski, S. Orłowski, W. Nowak,
    "Monte Carlo approach to electromagnetic wave propagation through biological tissue"
    Curr. Topics Biophys. 34 (suppl. A) (2011), 23-24

  • K. Mikulska-Rumińska, Ł. Pepłowski, W. Nowak,
    "Nanomechanics of Ig-like domains of human contactin (BIG-2)"
    J. Mol. Model. 17 (2011), 2313-2323
    DOI: 10.1007/s00894-011-1010-y

  • K. Mikulska-Rumińska, J. Strzelecki, A. Balter, W. Nowak,
    "Nanomechanics of neuronal junction – stretching FNIII domains of human contactins"
    Eur. Biophys. J. Biophys. Lett 40 (2011), S220-S220
    DOI: 10.1007/s00249-011-0729-9

  • J. Strzelecki, J. Strzelecka, K. Mikulska-Rumińska, M.Tszydel, A. Balter, W. Nowak,
    "Nanomechanics of new materials - AFM and computer modelling studies of trichoptera silk"
    Cent. Eur. J. Phys. 9 (2) (2011), 482-491

  • A. Gogolińska, dr hab. Edward Ochmański, prof. UMK, W. Nowak,
    "Petri Nets in Immunological System Modeling"
    in E. Ochmański, W. Penczek (editor), Matematyczne metody modelowania i analizy systemow wspolbieznych MASYW 2010, Institute of Foundations of Computer Science, Polish Academy of Sciences, Warszawa (2011), pp. 35-46
    ISBN: 978-83-63159-00-9




2009
  • J. Strzelecki, K. Mikulska-Rumińska, Małgorzata Lekka, Andrzej Kulik, A. Balter, W. Nowak,
    "AFM force spectroscopy and steered molecular dynamics simulation of protein Contactin 4"
    Acta Phys. Pol. A Suppl. 116 (2009), 156-159

  • W. Nowak,
    "Intracellular nanomanipulation by a photonic-force microscope with real-time acquisition of a 3D stiffness matrix"
    Nanotechnology 20 (2009), 285709-285718

  • J. Strzelecki, K. Mikulska-Rumińska, A. Balter, W. Nowak,
    "Single molecule AFM force spectroscopy and steered molecular dynamics of Contactin-4 protein"
    Eur. Biophys. J. Biophys. Lett. Suppl. 38 (Suppl 1) (2009), S117-S117

  • W. Nowak,
    "Symulacje dynamiki molekularnej biomolekuł na progu XXI wieku"
    Kosmos 58 (282-283) (2009), 43-48




2008
  • Ł. Pepłowski, K. Kubiak-Ossowska, S. Zelek, W. Nowak,
    "A Comparative DFT Study of Substrates and Products of Industrial Enzyme Nitrile Hydratase"
    Int. J. Quantum Chem. 108 (2008), 161-179

  • Ł. Pepłowski, K. Kubiak-Ossowska, W. Nowak,
    "Mechanical aspects of nitrile hydratase enzymatic activity. Steered molecular dynamics simulations of Pseudonocardia thermophila JCM 3095"
    Chem. Phys. Lett. 467 (2008), 144-149

  • K. Kubiak-Ossowska, W. Nowak,
    "Molecular Dynamics Simulations of The Photoactive Protein Nitrile Hydratase"
    Biophys. J. 94 (2008), 3824-3838

  • D. Bielińska-Wąż, W. Nowak, Ł. Pepłowski, P. Wąż, S.C. Basak, R. Natarajan,
    "Statistical spectroscopy as a tool for the study of molecular similarity"
    J. Math. Chem. 43 (2008), 1560-1572

  • S. Orłowski, W. Nowak,
    "Topology and Thermodynamics of Gaseous Ligands Diffusion Paths in Human Neuroglobin "
    Biosystems 94 (2008), 263-266
    DOI: http://dx.doi.org/10.1016/j.biosystems.2008.04.016




2007
  • D. Bielińska-Wąż, T.Clark, P. Wąż, W. Nowak, A.Nandy,
    "2D-dynamic representation of DNA sequences"
    Chem. Phys. Lett. 442 (2007), 140-144

  • D. Bielińska-Wąż, W. Nowak, P.Wąż, A.Nandy, T.Clark,
    "Distribution moments of 2D-graphs as descriptors of DNA sequences"
    Chem. Phys. Lett. 443 (2007), 408-413

  • Ł. Pepłowski, K. Kubiak-Ossowska, W. Nowak,
    "Hydrataza nitrylowa - aktywowany światłem enzym przemysłowy"
    Biotechnologia 1 (2007), 63-76

  • Ł. Pepłowski, K. Kubiak-Ossowska, W. Nowak,
    "Insights into catalytic activity of industrial enzyme Co-nitrile hydratase. Docking studies of nitriles and amides"
    J. Mol. Model. 13 (2007), 725-730

  • W. Nowak,
    "Introduction to Stochastic Search and Optimization. Estimation, Simulation, and Control"
    IEEE Trans/ Neural Net. 18 (2007), 964-965

  • S. Orłowski, W. Nowak,
    "Locally enhanced sampling molecular dynamics study of the dioxygen transport in human Cytoglobin"
    J. Mol. Model. 13 (2007), 715-723

  • K. Kubiak-Ossowska, W. Nowak,
    "Molecular Dynamics in Excited States: Landau – Zener Model of Nitric Oxide Geminate Recombination to Nitrile Hydratase"
    in Urlich H. E. Hansmann, Jan Meinke, Sandipan Mohanty, Olav Zimmermann (editor), From Computational Biophysics to Systems Biology (CBSB07), Proceedings of the NIC Worhshop 2007, John von Neumann Institute for Computing, Germany (2007), pp. 199-202
    ISBN: 978-3-9810843-2-0

  • S. Orłowski, W. Nowak,
    "Oxygen Diffusion in Minihemoglobin from cerebratus lacteus - a Locally Enhanced Sampling Study"
    Theor. Chem. Acc. 117 (2007), 253-258

  • Adamczak Rafał, Ł. Pepłowski, W. Nowak,
    "Performance of Neural Networks Based Transmembrane Helix Prediction Methods Applied to Mosquito Anopheles Gambiae G-Protein Coupled Odorant Receptors"
    in J. Meller, W.Nowak (editor), Advances in Computational and Systems Biology 1, Peter Lang Verlag, Frankfurt (2007), pp. 100-104
    ISBN: ISBN 978-3-631-56221

  • W. Nowak, S.Wasilewski, Ł. Pepłowski,
    "Steered Molecular Dynamics as a Virtual Atomic Force Microscope"
    in From Computational Biophysics to Systems Biology (CBSB07), Proceedings of the NIC Worhshop 2007, ohn von Neumann Institute for Computing, Julich (2007), pp. 251-254

  • Ł. Pepłowski, K. Kubiak-Ossowska, W. Nowak,
    "The Locally Enhanced Sampling Study of Large Ligands Diffusion inside Enzyme, Acrylonitrile and Acrylamide Journey in Nitrile Hydratase"
    in Urlich H. E. Hansmann, Jan Meinke, Sandipan Mohanty, Olav Zimmermann (editor), From Computational Biophysics to Systems Biology (CBSB07), John von Neumann Institute for Computing, Germany (2007), pp. 259-262
    ISBN: 978-3-9810843-2-0

  • S.C. Basak, R. Natarajan, W. Nowak, P. Miszta, J. Klun,
    "Three dimensional structure-activity relationships (3D-QSAR) for insect repellency of diastereomeric compounds: A hierarchical molecular overlay approach"
    SAR QSAR Environ Res. 18 (2007), 237-250
    DOI: 10.1080/10629360701303784




2006
  • M.Ullrich, W. Nowak,
    "Towards stereoselectivity in the addition of diethylzinc to bezaldehyde. Molecular modelling of N,S-camphor based catalysts"
    in Chemometrics – methods and spplications, Institute of Forensic Research Publishers, Krakow (2006), pp. 407-413




2005
  • W. Nowak, P.Maszalek,
    "Molecular Dynamics Simulations of Single Molecule Atomic Force Microscope Experiments"
    in COMPUTATIONAL CHEMISTRY: REVIEWS OF CURRENT TRENDS , World Scientific, Singapore (2005), pp. 47-84
    ISBN: 978-981-256-097-1




2004
  • Z.Lu, W. Nowak, G.Lee, P.Marszalek, W.Yang,
    "Elastic properties of single amylose chains in water: a quantum mechanical and AFM study"
    J. Am. Chem. Soc. 126 (2004), 9033-9041

  • G.Lee, W. Nowak, J.Jaroniec, Q.Zhang, P.E.Marszalek,
    "Molecular dynamics simulations of forced conformational transitions in 1,6-linked polysaccharides"
    Biophys. J. 87 (2004), 1456-1465

  • G.Lee, W. Nowak, J.Jaroniec, Q.Zhang, P.E.Marszalek,
    "Nanomechanical Control of Glucopyranose Rotamers"
    J. Am. Chem. Soc. 126 (2004), 6218-6219




2003
  • K. Kubiak-Ossowska, Malgorzata Kowalska, W. Nowak,
    "Molecular dynamics Study of Early Events During Photooxidation of Eye Lens Protein γB-crystallin"
    J. Mol. Struct. 630 (2003), 315 -325




2002
  • W. Nowak,
    "Density Functional Study on Geometry and Electronic Structure of Nitrile Hydratase Active Site Model"
    Int. J. Quantum Chem. 90 (2002), 1174-1187

  • W. Nowak,
    "Introduction to Database Systems (Wprowadzenie do systemów baz danych)", Wydawnictwa Naukowo-Techniczne, Warszawa (2002)
    ISBN: 83-204-2541-7




2001
  • W. Nowak, V.Cody, A.Wojtczak,
    "Computer modeling studies of the structural role of NADPH binding to active site mutants of human dihydrofolate reductase in complex with piretrexim"
    Acta Biochim. Pol. 48 (2001), 903-916




2000
  • W. Nowak,
    "Komputerowe modelowanie dynamiki białek transportowych i ich oddziaływań z ligandami", UMK, Toruń (2000)




1999
  • Szubiakowski Jacek, A. Balter, W. Nowak, Wiśniewski Krzysztof, Aleksandrzak Krzysztof,
    "Substituent-sensitive anisotropic rotations of 9-acetoxy-10-phenylanthracenes. Fluorescence anisotropy decay and quantum-mechanical study "
    Chem. Phys. Lett. 313 (1999), 473-483