Publikacje
2021
- Yuanyuan Xia, Xiaoyu Li, Linli Yang, Xiaozhou Luo, Wei Shen, Yu Cao, Ł. Pepłowski, Xianzhong Chen,
"Development of thermostable sucrose phosphorylase by semi-rational design for efficient biosynthesis of alpha-D-glucosylglycerol"
Appl. Microbiol. Biotechnol. 105 (2021), 7309-7319
DOI: https://doi.org/10.1007/s00253-021-11551-0 - Junling Guo, Zhongyi Cheng, J. Berdychowska, Xiaonan Zhu, Lingling Wang, Ł. Pepłowski, Zhemin Zhou,
"Effect and mechanism analysis of different linkers on efficient catalysis of subunit-fused nitrile hydratase"
Int. J. Biol. Macromol. 181 (2021), 444-451
DOI: https://doi.org/10.1016/j.ijbiomac.2021.03.103
2020
- Zhongyi Cheng, Yao Lan, Junling Guo, Dong Ma, Shijin Jiang, Qianpeng Lai, Zhemin Zhou, Ł. Pepłowski,
"Computational Design of Nitrile Hydratase from Pseudonocardia thermophila JCM3095 for Improved Thermostability"
Molecules 25(20) (2020), 1-18
DOI: 10.3390/molecules25204806
2019
- Yuanyuan Xia, Ł. Pepłowski, Zhongyi Cheng, Tianyi Wang, Zhongmei Liu, Wenjing Cui, Michihiko Kobayashi, Zhemin Zhou,
"Metallochaperone Function of the Self-Subunit Swapping Chaperone Involved in the Maturation of Subunit-Fused Cobalt Type Nitrile Hydratase."
Biotechnol. Bioeng. 116(3) (2019), 481-489
DOI: 10.1002/bit.26865
2018
- Z. Cheng, Ł. Pepłowski, W. Cui, Y. Xia, Z. Liu, J. Zhang , M. Kobayashi, Z. Zhou,
"Identification of Key Residues Modulating the Stereoselectivity of Nitrile Hydratase towards rac-Mandelonitrile by Semi-rational Engineering."
Biotechnol. Bioeng. 115(3) (2018), 524-535
DOI: 10.1002/bit.26484 - Y. Xia, W. Cui, Z. Cheng, Ł. Pepłowski, Z. Liu, M. Kobayashi, Z. Zhou,
"Improving Thermostability and Catalytic Efficiency of the Subunit-Fused Nitrile Hydratase by Semi-Rational engineering"
ChemCatChem 10(6) (2018), 1370-1375
DOI: 10.1002/cctc.201701374 - Z. Cheng, W. Cui, Y. Xia, Ł. Pepłowski, M. Kobayashi, Z. Zhou,
"Modulation of NHase Regioselectivity towards Dinitriles by Tailoring the Substrate Binding Pocket Residues"
ChemCatChem 10(2) (2018), 449-458
DOI: 10.1002/cctc.201701170
2014
- R. Jakubowski, A. Gogolińska, Ł. Pepłowski, Piotr Skrzyniarz, W. Nowak,
"COMPUTATIONAL STUDIES OF TTR RELATED AMYLOIDOSIS: EXPLORATION OF CONFORMATIONAL SPACE THROUGH PETRI NET-BASED ALGORITHM"
TASK Quarterly 3 (2014), 267 - J. Strzelecki, Ł. Pepłowski, Lenartowski Robert, W. Nowak, A. Balter,
"Mechanical transition in a highly stretched and torsionally constrained DNA"
Phys. Rev. E. 89 (2014), 020701-1-020701-5
DOI: 10.1103/PhysRevE.89.020701 - R. Jakubowski, Piotr Skrzyniarz, Ł. Pepłowski, W. Nowak,
"Transthyretin Induced Amyloidosis Interactions, Mechanisms and Potent Drugs Design"
Biophys. J. Suppl. 106 (2014), 661a
DOI: 10.1016/j.bpj.2013.11.3659
2013
- Ł. Pepłowski, Joanna Estkowska, W. Nowak,
"Electric field effects on EGF and bFGF ligand- receptor unbinding investigated by Steered MD method"
Eur. Biophys. J. Biophys. Lett. Suppl. 42 (Suppl 1) (2013), S94-S94
DOI: 10.1007/s00249-013-0917-x - K. Mikulska-Rumińska, R. Jakubowski, Ł. Pepłowski, M. Dąbrowski, A. Gogolińska, Włodzisław Duch, W. Nowak,
"On applications of virtual atomic force microscope in studies of brain proteins"
Eur. Biophys. J. Biophys. Lett. Suppl. 42 (Suppl 1) (2013), S93-S93
DOI: DOI 10.1007/s00249-013-0917-x - D. Bielińska-Wąż, dr Wąż Piotr, prof. Clark Timothy, dr hab. Puzyn Tomasz, Ł. Pepłowski, W. Nowak,
"Statistical properties of spectra of chloronaphthalenes"
J. Math. Chem. 51 (2013), 857-867
DOI: 10.1007/s10910-012-01117-4
2011
- Ł. Pepłowski, Sikora Mateusz, W. Nowak, Cieplak Marek,
" Molecular jamming—The cystine slipknot mechanical clamp in all-atom simulations "
J. Chem. Phys. 134 (2011), 085102-085116
DOI: doi:10.1063/1.3553801 - Ł. Pepłowski, R. Jakubowski, W. Nowak,
"Molecular dynamics study of bNeurexin-Neuroligin interactions"
Eur. Biophys. J. Biophys. Lett Volume 40, Supplement 1 (2011), S114-S114
DOI: 10.1007/s00249-011-0734-z - K. Mikulska-Rumińska, Ł. Pepłowski, W. Nowak,
"Nanomechanics of Ig-like domains of human contactin (BIG-2)"
J. Mol. Model. 17 (2011), 2313-2323
DOI: 10.1007/s00894-011-1010-y
2008
- Ł. Pepłowski, K. Kubiak-Ossowska, S. Zelek, W. Nowak,
"A Comparative DFT Study of Substrates and Products of Industrial Enzyme Nitrile Hydratase"
Int. J. Quantum Chem. 108 (2008), 161-179 - Ł. Pepłowski, K. Kubiak-Ossowska, W. Nowak,
"Mechanical aspects of nitrile hydratase enzymatic activity. Steered molecular dynamics simulations of Pseudonocardia thermophila JCM 3095"
Chem. Phys. Lett. 467 (2008), 144-149 - D. Bielińska-Wąż, W. Nowak, Ł. Pepłowski, P. Wąż, S.C. Basak, R. Natarajan,
"Statistical spectroscopy as a tool for the study of molecular similarity"
J. Math. Chem. 43 (2008), 1560-1572
2007
- Ł. Pepłowski, K. Kubiak-Ossowska, W. Nowak,
"Hydrataza nitrylowa - aktywowany światłem enzym przemysłowy"
Biotechnologia 1 (2007), 63-76 - Ł. Pepłowski, K. Kubiak-Ossowska, W. Nowak,
"Insights into catalytic activity of industrial enzyme Co-nitrile hydratase. Docking studies of nitriles and amides"
J. Mol. Model. 13 (2007), 725-730 - Adamczak Rafał, Ł. Pepłowski, W. Nowak,
"Performance of Neural Networks Based Transmembrane Helix Prediction Methods Applied to Mosquito Anopheles Gambiae G-Protein Coupled Odorant Receptors"
in J. Meller, W.Nowak (editor), Advances in Computational and Systems Biology 1, Peter Lang Verlag, Frankfurt (2007), pp. 100-104
ISBN: ISBN 978-3-631-56221 - W. Nowak, S.Wasilewski, Ł. Pepłowski,
"Steered Molecular Dynamics as a Virtual Atomic Force Microscope"
in From Computational Biophysics to Systems Biology (CBSB07), Proceedings of the NIC Worhshop 2007, ohn von Neumann Institute for Computing, Julich (2007), pp. 251-254 - Ł. Pepłowski, K. Kubiak-Ossowska, W. Nowak,
"The Locally Enhanced Sampling Study of Large Ligands Diffusion inside Enzyme, Acrylonitrile and Acrylamide Journey in Nitrile Hydratase"
in Urlich H. E. Hansmann, Jan Meinke, Sandipan Mohanty, Olav Zimmermann (editor), From Computational Biophysics to Systems Biology (CBSB07), John von Neumann Institute for Computing, Germany (2007), pp. 259-262
ISBN: 978-3-9810843-2-0
English version
