Software and datasets:

Data mining | machine learning | neural networks | neuroscience | pattern recognition | statistics | visualization of data | other software

Programy i dane: sieci neuronowe | neurobiologia | uczenie maszynowe | Data mining | statystyka | rozpoznawanie struktur | wizualizacja, inne programy

Maintained by Wlodzislaw Duch

Pismo
i Konferencje Polskiego Towarzystwa Kognitywistycznego


English version of this page is more up-to-date!
Tylko wersja angielska tej strony jest aktualizowana! Ta wersja pochodzi z końca 2005 roku.
Czerwony kolor = superstrony.

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    Neural Networks (sieci neuronowe)

    On-line demos (demonstracje w sieci):

    Artificial Neural Networks Lab: Java applets and GIF- animation Many nice demonstrations: SVM, boosting, trees
    DemoGNG, competitive learning (Loos, Fritzke)
    Demonstracje algorytmów genetycznych i sieci neuronowych w Javie
    EUDAPTICS - SOMine
    Java Applets for Neural Network and Artificial Life
    RBF demo (Hong, MIT)
    Virtual Minds Java demo
    WebSim Java demo: neural, optimization, plots (Boston U.)
    WEBSOM - A novel SOM-based approach to free-text mining

    Lists of links:

    Gepetto - lista z Amsterdamu
    Matlab CI software, Kevin Murphy.
    ML-Net Software links
    Neural/AI Software - świetna lista z Aston University (from Aston)
    NN simulation tools - Franz Kurfess, Uni. Ulm, z opisami ponad 50 programów
    Free & Shareware Simulators - około 100 programów, PNL Computational Intelligence list
    Free & Shareware Simulators - ponad 40 programów, PNL Neural Networks list
    Neural Software - lista z Bristolu, 22 pozycje
    Neural Networks and Fuzzy Systems, including Association Rule Induction, Regression, Trees, Bayes Classifier, Graphical Models, Network Training, Probabilistic and Fuzzy Clustering, Convex Hull Construction
    Sciview list

    Large software packages (duże symulatory):

    Stuttgart Neural Network Simulator (SNNS), kopia w Polsce Java Neural Network Simulator, JNNS (kontynuacja SNNS)
    LNKnet, MIT, neural, statistical, machine leanring and feature selection.
    LENS, light, efficient network simulator
    SciViews open source, data acquisition, space-time series, image analysis etc.
    R-project, statistical computing.

    Other software packages (inne symulatory):
    DDlab, discrete dynamics networks
    Dynamics - program i tutorial |
    DIBA, with interesting visualization.
    ffnet, regularization, SA and other interesting things.
    JavaSOM
    Joone, Java free NN engine
    LENS, with good visualization.
    LVQ and SOM-PACK, Helsinki | SOM Toolbox in Matlab, Helsinki |
    LVQ visualization, Magdeburg |
    Quantum clustering, D. Horn |
    SOM and LISSOM, with some programs for NLP, from UTCS Tx |
    SimBrain, NN+MDS.
    Netlab (Bishop, Nabney) - programy w Matlabie do sieci neuronowych i modeli Bayesowskich, kopia w Toruniu
    Neuralogic Windows: Ultra High Performance NN (PC, Cray)
    NODELIB, Neural Optimization Development Engine library (PC, Cray)
    PDP ++ 2003, new version from the PDP book of Rumelhart and McClelland

    Mantra - Neural Java, spiking neuron and other models (Gerstner)

    SNARLI, Java, by Simon D. Levy

    Commercial, demos only:

    GhostMiner Software
    GTech, brain signals in Matlab

    Gensym Corporation, intelligent operations management, neural & AI software
    FuzzyTech, fuzzy and neurofuzzy

    IFS Limited, Amber i Onyx neuroforcasting
    Orka, program NN/GA firmy Arkus (Wrocław), komercyjny, demo
    NeuroSolutions Evaluation Edition
    NeuroShell Easy and Gene Hunter demos, Ward Systems Group
    Saxon, NN+MDS.
    Universal Problem Solvers, Inc. (Transdimensional Learning, MPIL)
    Neural Connection - SPSS
    Vitalnet System for Analyzing Health Data
    Z-solutions

    Neuroscience

    Neuroscience simulation software
    GENESIS Simulator, biological neurons
    EEGLAB, signal processing in Matlab , EEG, MEG and other electrophysiological signals.
    NEST initiative

    Machine learning (uczenie maszynowe)

    AI Planning Systems (Maryland)
    KDnuggets Siftware - długa lista, wszystkie metody
    KDnets Software - długa lista, wszystkie metody
    CMU Software in ML list
    Cagliari University list
    Tom Mitchell, NN + Bayes + Decision Tree software

    CBA, Classification and Association Rules, NUS Singapore
    Domrule, logical rules, Lin Min Fu
    Emerald, AG and other ML software, Michalski's GMU lab
    Machine Learning Library w C++, gotowe kawałki ale całość trudna w użyciu (Silicon Graphics)
    MLC++, Color GLDs
    Machine Learning Project,WEKA, Waikato, NZ, wiele modeli | WEKA Metalearning
    ML archive - University of Portsmouth AI Group
    Neural/AI Software (from Aston)
    Torch ML Library w C++, darmo
    YALE, Yet Another Learning Environment, in Java

    ID3 Code z przykładami, drzewo decyzji
    NETLAB Bayesian Neural Networks (Bishop, Nabney), kopia w Toruniu
    RIPPER rule induction
    Soar (Newell, Simon, others) - expert system with some learning capabilities
    Statistical Pattern Recognition Lib (from TU Delft)
    TANAGRA, includes visualizaiton, clustering, association, supervised leanring
    TiMBL, Memory-Based Learning techniques
    Forte (First Order Revision of Theories from Examples) machine learning system

    Rough sets (zbiory przybliżone):

    GROBIAN project - user-friendly rough set software
    Reduct & Lobbe Technologies (rough sets, Canada)
    Rosetta (rough sets)
    Rough Enough (Torvill Bjorvand)
    ROSE Rough Set Software, II-PP
    Rough Set software (Uni. Regina)
    Rough Set systems, Inc.

    CBR, Case-Based:

    CBR Software List
    CBR Software, Haley Enterprise

    Varia:

    C5.0, See5 & Cubist (Ross Quinlan, Rulequest Research) | C4.5 software and tutorial |
    YaDT, fast tree and C4.5 improvements EC4.5 |
    Automated Reasoning, troubleshooting support
    dmt - automatyczna identyfikacja
    Genetic Algorithms Digest
    Partek Data Analysis & Modeling Software: PR, NN, Data Mining, demo
    Machine Learning for Cancer Diagnosis and Prognosis
    AI Medical Systems in Routine Use
    NeuroSoft SynthTalk, Gam, Regulus

    Pattern recognition (rozpoznawanie obiektów)

    Ahlea Systems Corp: Pattern Recognition in Matlab, Software Patches, komercyjny
    SprLib and ANNLib, from Delft Technical University Pattern Recognition Group
    Statistical Pattern Recognition Toolbox
    TOOLDIAG pattern recognition toolbox

    Data mining

    Data Mining Software List
    Data Mining Software Vendors
    Cognitive Processor - Molly Group support management software, data mining
    Free and Commercial Data Mining Software
    lista z DM Review (patrz pod Software Demos)

    DM Maximizer, DMM demo | DMS on-line serwer, Inductive Learning by Logic Minimization (ILLM) | Galvano software, French group, many programs, with DM tutorial | GhostMiner Software | IBM Quest (free) | Info-Fuzzy Network (IFN) (free) | Megaputer PolyAnalyst, TextAnalyst, WebAnalyst | Mine It Easyminer |
    SAS Enterprise Miner | SGI MineSet | Xpert Rule Miner (Attar Software) | XELOPES library, embedded DM |

    Business Miner (BusinessObjects) |

    Molecular Mining (bioinformatics software GeneLinker)
    Dragon Genome Explorer

    Test psychometryczny |

    Math & Statistics - lists

    Netlib - numerical software
    Statlib - statistical software
    Darren guide to statistical resources, software
    Free statistical software packages
    Guide to mathematical software (NIST, doskonały przewodnik)
    Sources of Math Software (NIST)
    Statistical and Computational Software (RFE list)
    Statistics.com tools, software, data
    Exact randomisation statistics software list

    Anderson Hospital, biostatistics programs
    Statistical Analysis and Graphics, Java Applets
    Web Pages that Perform Statistical Calculations! also many free statistical packages. Mathematical Programming in Machine Learning (Wisconsin)
    GMM and MINZ packages in Matlab, spectral density, probit, logit (Mike Cliff)
    Demonstracje algorytmów genetycznych i sieci neuronowych w Javie
    Provalis Research: MultiVariate Statistical + inne programy statystyczne.
    Statistical Software Components from Boston College Department of Economics
    Ordination software (for ecologist)

    Scientific software, Word2Tex etc (useful)

    Free software:

    list from Statistics.com tools, software, data
    list from recursive partitioning
    AMELIA: A Program for Missing Data, statistical software, Gary King
    AutoClass - Bayesian classification
    CN2 decision tree
    EMMIX, EM mixture model
    Medcalc, statistics for biomedical research
    Multiple imputation software
    NEFCLASS< NEFCON< NEFPROX neurofuzzy software (Nauck)
    SISA, Simple Interactive Statistical Analysis (interakcyjna analiza danych)
    SNOB MML unsupervised classification
    TimeStat: freeware PCA, ARMA, FTT, spreadsheet style
    Vista - visual statitics

    SVM and kernel methods
    BSVM, SVM solved by another method
    LIBSVM, SVM for large classification and regression
    LSSVMlab, least squares SVM, Matlab toolbox + tutorials
    GiniSVM, SVM for regression
    GIST, SVM and kernel PCA (Unix only)
    List from Kernel-machines.org
    Kernel methods in Matlab (John Shawe-Taylor & Nello Cristianini)
    SVM On-line demonstration
    SVM-Light, SVM software for regresion and classification

    DTREG generates SVM, decision tree and logistic regression models (commercial, demo available)

    Clustering
    COMPACT - Comparative Package for Clustering Assessment, D. Horn
    CLUSION, Cluster Analysis and Cluster Ensemble Software
    Dendrograms data clustering
    Fuzzy Clustering
    G-means, C++ program
    Joining clustering algorithms, dendrograms and other
    Multi-dimensional Clustering and Outlier Detection

    Quantum clustering, D. Horn | Software for Automatic Clustering
    SP-means, C++ program

    Commercial Statistical Software:

    Parallel Performance Group, Inc., High-Technology Commercial Software
    CART | MARS | GMAX-DM, genetic system (Salford Systems)
    Data Desk (Majih)
    AccuROC for Windows | GraphROC for Windows
    Minitab (Minitab Inc)
    Predictive Data Mining, Weiss S, Indurkhya, book and software
    Simstat for Windows StatSoft Polska Sp. z o.o. - STATISTICA
    StatSol, missing data, statistical software
    Stata statistical software
    Statgraphics (Manugistics Inc), STATG-PL
    CSS STATISTICA (StatSoft Inc.)
    SPSS (SPSS Inc.), pakiet Systat
    SAS Institute - DSS, data mining
    S-Plus (Mathsoft)
    StatXact, LogXact (Cytel)

    Visualization of multidimensional data (wizualizacja danych)

    Graphics and data analysis software
    Collection of MDS-like programs | Taguchi MDS programs collection
    MDS, multidimensional scaling | MDS Alscal | New MDSX, multidimensional scaling | Permap MDS | ALSCAL - old MDS Program
    Visual insights, methods and software for e-Business.
    On-line Library of Information Visualization Environments.
    Information Visualization, T. Cribbin.
    HiSee progject, Scott Hotton and Jeff Yoshimi.
    Levenstein Software
    Locally Linear Embedding
    MaxdView, bioinfo data Principal curves page
    Proximity visualization, W. Basalaj, interesting thesis


    Davis - PCA, parallel, dendrograms, touring ...
    GCSVIS - Growing Cell Structures.
    GTM - Bishop and Svensen.
    Hyperplane animator - animacja hiperpłaszczyzn
    PhiVis, hierarchical visualization - Bishop and Tipping
    Parvis, a tool for parallel coordinates
    Spotfire - wizualizacja klastrów
    WheelVue visualization - Excel, tree-like diagrams
    Xgobi, XGvis - świetne programy do wizualizacji | tutorial, gene expression data |

    More visualization algorithms

    Other software

    LEDA, Library of Efficient Data types and Algorithms zawiera intersujące programy przydatne w ML
    Benchin Software Reviews - also for statistical/ AI/ neural software
    Jadex BDI Agents Java software
    Software in Mental Health
    Intel OpenML library (Bayesian methods) | Intel OpenML library (Bayesian methods) | Intel Open Source Computer Vision

    Psychometric programs:

    MMPI/MMPI-2 Adult Interpretive Report | Psychological Assessment Resources | Psychological Science net |

    Optimization:


    INFORMS OR/MS Resource Collection.
    ASA, Ingber Lester - Adaptive Simmulated Annealing code
    Global Optimization: Software, Events, Publications, Home Pages
    Merlin - multidimensional optimization
    NEOS Guide: Optimization Software
    Multisimplex methods, demo.
    Simulated Annealing info i software.

    Belief networks:

    Belief Network Power Constructor
    Bayesian Knowledge Discovery
    Bayesia Lab, Bayesia.
    Bayesian Network Repository
    Bayes net Matlab toolbox (K. Murphy)
    Bayesware Ltd Discoverer
    Belief Network (BN) PowerConstructor
    Decision Analysis Software
    GeNIe and SMILE- building graphical decision-theoretic models, Bayesian networks, influence diagrams, and structural equation models.
    Rectified Gaussian Belief Networks (MIT), Matlab Program
    Software for Manipulating Belief Networks (> 10 packages) and for Learning Belief Networks from Data
    Bayes Belief Networks + HMM + MDP + Kalman filter, Kevin Murphy.

    Genetic optimization software:

    GA Archive

    HMM:

    HMMER - hidden Markov models of DNA and protein consensus
    HMM + MDP, Kevin Murphy.

    ICA, Independent Component Analysis:

    Blind Source Separation Using Temporal Predictability, Matlab code
    Several ICA algorithms, Matlab code (DK)
    ICA Lab, Matlab code, RIKEN

    Text Processing, retrieval, clusterization, classification:

    NLP Tools lsit
    Bow Toolkit, C code

    Psychology and cognitive science software:

    Cognitive & Psychology Software
    CTI Psychology: Software
    Computers in Mental Health
    Software Archives in Psychology
    Software for visual psychophysics
    Tlearn - Kim Plunkett and Jeff Elman | Walnut - CALM, Hopfield, other | Rethinking Innateness: A Connectionist Perspective on Development

    Linguistics:

    Natural Language Software Registry
    Neural Translator - słownik

    Speech-related tools:

    CSLU Speech Tools, Spectrogram
    Speech Toys
    Speech corpora: CSLU Corpora | Linguistic Data Consortium | Machine Readable Spoken English Corpus

    Financial and econometric software:

    Attrasoft Neural Network Applications - przewidywania giełdowe, klasyfikacja obrazów i inne
    CodEc - Programs for Economics and Econometrics
    ELSA, Econometrics Laboratory Software Archive (Berkeley)
    LBS Model Building Software
    Lista z NUMA
    Reg-X, freeware (Stephen Hall, LBS)
    Software dla ekonomistów - CTI Centre Economics
    SORITEC, power tools for econometric and statistical analysis
    Winsolve - package for solving nonlinear macroeconomic models

    Expert Systems and AI Software:

    free POPLOG, POP11, LISP, Prolog and ML.
    AITECH (Katowice)

    Datasets

    Lists of data sources:

    CBMR list of data sources - great list from WWW Virtual Library
    GMD Repository and their
    ML-Net Data links
    Neural Networks Databases (UCI, CMU and other)
    RISE - Repository of online Information Sources used in information Extraction tasks

    Data:

    UCI Machine Learning Repository | kopia w Toruniu (nieoficjalna) | UCI KDD Archive | use http://ftp.ics.uci.edu/pub/machine-learning-databases/ instead of ftp!
    CMU Artificial Intelligence Repository
    CMU Machine Learning Repository
    Bob Duin links to data
    Data hub (links to many data types)
    UCLA data and their cases studies

    Bioinformatics data
    Bacterial Genomes Functional Annotation Benchmark Dataset
    Biologia molekularna (molecular biology)
    Kent Ridge bioinformatics | Kent Ridge ML bioinformatics |
    UPITT Cancer Gene Expression Data (Pittsburg)
    Data and systematic comparison of results (Leuven)
    Stanford Microarray Database

    KEDRI, gene expressions (large zip file!)

    Dane ekonometryczne (ELSA, Berkeley) | FinWeb Databases | Financial Data Finder | Global Financial Data | Investment data collection (FTP) |
    Climate Modeling data
    Census database, USA
    DASL, The Data and Story Library (StatLib)
    DELVE - Data for Evaluating Learning in Valid Experiments
    Dr. B's Wide World of Web Data
    International Association for Statistical Computing | datasets from IASC | few links to IASC databases
    IEEE Neural Networks Council Standards Committee, Working Group on Data Modeling Benchmarks
    National Space Science Data Center, NASA datasets)
    Statistical Reference Datasets (NIST)
    StatLog datasets (Portugal)
    LLIAC datasets (Portugal)
    SCDS - create your own syntethic data
    SIMBAD astronomical database

    Images:
    Cytopathology

    NIPS 2000 competition data
    Algoval - a system for evaluating algorithms on datasets.
    The Robotics Data Set Repository


  • Osobne strony
    AI w szukaniu informacji | Inteligencja Obliczeniowa | Kognitywistyka | Neurobiologia | Nauka i jej obrzeża | Software & Databases | Sztuczna Inteligencja i Uczenie Maszynowe |

    Last modification 11.11.2005, by Wlodzislaw Duch