Publikacje

Typ publikacji:Wszystko Książka Artykuł Rozdział
Lista filadelfijska:Wszystko Tak Nie  



2017
  • J. Rydzewski, W. Nowak,
    Thermodynamics of camphor migration in cytochrome P450cam by atomistic simulations
    Sci. Rep. *7* (2017); 7736 -

    DOI: https://www.nature.com/articles/s41598-017-07993-0

  • J. Rydzewski, W. Nowak,
    Ligand diffusion in proteins via enhanced sampling in molecular dynamics
    Phys. Life Rev. * * (2017); -

    DOI: 10.1016/j.plrev.2017.03.003

  • J. Rydzewski, W. Nowak,
    Rare-event sampling in ligand diffusion: Reply to comments on “Ligand diffusion in proteins via enhanced sampling in molecular dynamics”
    Phys. Life Rev. *3* (2017); -

    DOI: 10.1016/j.plrev.2017.08.011





2016
  • J. Rydzewski, W. Nowak,
    Molecular Dynamics Simulations of Large Systems in Electronic Excited States (2016); 1917 - 1941

  • J. Rydzewski, R. Jakubowski, prof. Giuseppe Nicosia, W. Nowak,
    Conformational sampling of a biomolecular rugged energy landscape
    IEEE/ACM Trans. Comput. Biol. * * (2016); -

    DOI: 10.1109/TCBB.2016.2634008

  • J. Rydzewski, W. Nowak,
    Machine learning based dimensionality reduction facilitates ligand diffusion paths assessment: a case of cytochrome P450cam
    J. Chem. Theory Comput. * * (2016); -

    DOI: 10.1021/acs.jctc.6b00212





2015
  • J. Rydzewski, Wojciech Strzałka, W. Nowak,
    Nanomechanics of PCNA: A protein-made DNA sliding clamp
    Chem. Phys. Lett. *634* (2015); 236 - 242

    DOI: doi:10.1016/j.cplett.2015.06.027

  • J. Rydzewski, R. Jakubowski, W. Nowak,
    Entropic measure to prevent energy over-minimization in molecular dynamics simulations
    J. Chem. Phys. *143(19)* (2015); 171103

    DOI: 10.1063/1.4935370

  • J. Rydzewski, W. Nowak,
    Memetic algorithms for ligand expulsion from protein cavities
    J. Chem. Phys. *143(12)* (2015); 124101 -

    DOI: 10.1063/1.4931181

  • J. Rydzewski, W. Nowak, Giussepe Nicosia,
    Inferring pathological states in cortical neuron microcircuits
    J. Theor. Biol. *386* (2015); 34 - 43

    DOI: doi:10.1016/j.jtbi.2015.09.004

  • R. Jakubowski, J. Rydzewski, W. Nowak,
    On the role of metal ions in synaptic proteins assembly
    Protein Sci. *24* (2015); 161 - 162