Items 1 - 28 of 28
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Sinha AU, Meller J.
Abstract
Sensitivity analysis for reversal distance and breakpoint reuse in genome rearrangements.
Pac Symp Biocomput. 2008;:37-48.
PMID: 18229675 [PubMed - in process]
2:
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Olshavsky NA, Groh EM, Comstock CE, Morey LM, Wang Y, Revelo MP, Burd C, Meller J, Knudsen KE.
Abstract
Cyclin D3 action in androgen receptor regulation and prostate cancer.
Oncogene. 2007 Dec 17; [Epub ahead of print]
PMID: 18084330 [PubMed - as supplied by publisher]
3:
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Takatori A, Geh E, Chen L, Zhang L, Meller J, Xia Y.
Abstract
Differential transmission of MEKK1 morphogenetic signals by JNK1 and JNK2.
Development. 2008 Jan;135(1):23-32. Epub 2007 Nov 21.
PMID: 18032450 [PubMed - in process]
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Howarth JW, Meller J, Solaro RJ, Trewhella J, Rosevear PR.
Abstract
Phosphorylation-dependent conformational transition of the cardiac specific N-extension of troponin I in cardiac troponin.
J Mol Biol. 2007 Oct 26;373(3):706-22. Epub 2007 Aug 22.
PMID: 17854829 [PubMed - indexed for MEDLINE]
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Porollo A, Meller J.
Free in PMC
Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D.
BMC Bioinformatics. 2007 Aug 29;8:316.
PMID: 17727718 [PubMed - indexed for MEDLINE]
6:
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Duch W, Swaminathan K, Meller J.
Abstract
Artificial intelligence approaches for rational drug design and discovery.
Curr Pharm Des. 2007;13(14):1497-508. Review.
PMID: 17504169 [PubMed - indexed for MEDLINE]
7:
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Cushion MT, Smulian AG, Slaven BE, Sesterhenn T, Arnold J, Staben C, Porollo A, Adamczak R, Meller J.
Free in PMC
Transcriptome of Pneumocystis carinii during fulminate infection: carbohydrate metabolism and the concept of a compatible parasite.
PLoS ONE. 2007 May 9;2(5):e423.
PMID: 17487271 [PubMed]
8:
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Sinha AU, Meller J.
Free in PMC
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms.
BMC Bioinformatics. 2007 Mar 8;8:82.
PMID: 17343765 [PubMed - indexed for MEDLINE]
9:
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Slaven BE, Meller J, Porollo A, Sesterhenn T, Smulian AG, Cushion MT.
No Abstract
Draft assembly and annotation of the Pneumocystis carinii genome.
J Eukaryot Microbiol. 2006;53 Suppl 1:S89-91. No abstract available.
PMID: 17169080 [PubMed - indexed for MEDLINE]
10:
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Slaven BE, Porollo A, Sesterhenn T, Smulian AG, Cushion MT, Meller J.
No Abstract
Large-scale characterization of introns in the Pneumocystis carinii genome.
J Eukaryot Microbiol. 2006;53 Suppl 1:S151-3. No abstract available.
PMID: 17169040 [PubMed - indexed for MEDLINE]
11:
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Porollo A, Meller J.
Abstract
Prediction-based fingerprints of protein-protein interactions.
Proteins. 2007 Feb 15;66(3):630-45.
PMID: 17152079 [PubMed - indexed for MEDLINE]
12:
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Tan M, Meller J, Jiang X.
Free in PMC
C-terminal arginine cluster is essential for receptor binding of norovirus capsid protein.
J Virol. 2006 Aug;80(15):7322-31.
PMID: 16840313 [PubMed - indexed for MEDLINE]
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Cao B, Porollo A, Adamczak R, Jarrell M, Meller J.
Free Full Text
Enhanced recognition of protein transmembrane domains with prediction-based structural profiles.
Bioinformatics. 2006 Feb 1;22(3):303-9. Epub 2005 Nov 17.
PMID: 16293670 [PubMed - indexed for MEDLINE]
14:
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Ivanenkov VV, Meller J, Kirley TL.
Abstract
Characterization of disulfide bonds in human nucleoside triphosphate diphosphohydrolase 3 (NTPDase3): implications for NTPDase structural modeling.
Biochemistry. 2005 Jun 28;44(25):8998-9012.
PMID: 15966724 [PubMed - indexed for MEDLINE]
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Wagner M, Adamczak R, Porollo A, Meller J.
Abstract
Linear regression models for solvent accessibility prediction in proteins.
J Comput Biol. 2005 Apr;12(3):355-69.
PMID: 15857247 [PubMed - indexed for MEDLINE]
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Adamczak R, Porollo A, Meller J.
Abstract
Combining prediction of secondary structure and solvent accessibility in proteins.
Proteins. 2005 May 15;59(3):467-75.
PMID: 15768403 [PubMed - indexed for MEDLINE]
17:
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Petre-Draviam CE, Williams EB, Burd CJ, Gladden A, Moghadam H, Meller J, Diehl JA, Knudsen KE.
Abstract
A central domain of cyclin D1 mediates nuclear receptor corepressor activity.
Oncogene. 2005 Jan 13;24(3):431-44.
PMID: 15558026 [PubMed - indexed for MEDLINE]
18:
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Adamczak R, Porollo A, Meller J.
Abstract
Accurate prediction of solvent accessibility using neural networks-based regression.
Proteins. 2004 Sep 1;56(4):753-67.
PMID: 15281128 [PubMed - indexed for MEDLINE]
19:
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Filippi MD, Harris CE, Meller J, Gu Y, Zheng Y, Williams DA.
Abstract
Localization of Rac2 via the C terminus and aspartic acid 150 specifies superoxide generation, actin polarity and chemotaxis in neutrophils.
Nat Immunol. 2004 Jul;5(7):744-51. Epub 2004 May 30.
PMID: 15170212 [PubMed - indexed for MEDLINE]
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Czyzyk-Krzeska MF, Meller J.
Abstract
von Hippel-Lindau tumor suppressor: not only HIF's executioner.
Trends Mol Med. 2004 Apr;10(4):146-9. Review.
PMID: 15162797 [PubMed - indexed for MEDLINE]
21:
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Porollo AA, Adamczak R, Meller J.
Free Full Text
POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins.
Bioinformatics. 2004 Oct 12;20(15):2460-2. Epub 2004 Apr 8.
PMID: 15073023 [PubMed - indexed for MEDLINE]
22:
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Tan M, Huang P, Meller J, Zhong W, Farkas T, Jiang X.
Free in PMC
Mutations within the P2 domain of norovirus capsid affect binding to human histo-blood group antigens: evidence for a binding pocket.
J Virol. 2003 Dec;77(23):12562-71. Erratum in: J Virol. 2004 Mar;78(6):3200.
PMID: 14610179 [PubMed - indexed for MEDLINE]
23:
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Turowski M, Yamakawa N, Meller J, Kimata K, Ikegami T, Hosoya K, Tanaka N, Thornton ER.
Abstract
Deuterium isotope effects on hydrophobic interactions: the importance of dispersion interactions in the hydrophobic phase.
J Am Chem Soc. 2003 Nov 12;125(45):13836-49.
PMID: 14599224 [PubMed - indexed for MEDLINE]
24:
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Kuznetsova AV, Meller J, Schnell PO, Nash JA, Ignacak ML, Sanchez Y, Conaway JW, Conaway RC, Czyzyk-Krzeska MF.
Free in PMC
von Hippel-Lindau protein binds hyperphosphorylated large subunit of RNA polymerase II through a proline hydroxylation motif and targets it for ubiquitination.
Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2706-11. Epub 2003 Feb 25.
PMID: 12604794 [PubMed - indexed for MEDLINE]
25:
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Meller J, Wagner M, Elber R.
Abstract
Maximum feasibility guideline in the design and analysis of protein folding potentials.
J Comput Chem. 2002 Jan 15;23(1):111-8.
PMID: 11913376 [PubMed - indexed for MEDLINE]
26:
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Meller J, Elber R.
Abstract
Linear programming optimization and a double statistical filter for protein threading protocols.
Proteins. 2001 Nov 15;45(3):241-61.
PMID: 11599028 [PubMed - indexed for MEDLINE]
27:
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Frary A, Nesbitt TC, Grandillo S, Knaap E, Cong B, Liu J, Meller J, Elber R, Alpert KB, Tanksley SD.
Free Full Text
fw2.2: a quantitative trait locus key to the evolution of tomato fruit size.
Science. 2000 Jul 7;289(5476):85-8.
PMID: 10884229 [PubMed - indexed for MEDLINE]
28:
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Meller J, Elber R.
Free in PMC
Computer simulations of carbon monoxide photodissociation in myoglobin: structural interpretation of the B states.
Biophys J. 1998 Feb;74(2 Pt 1):789-802.
PMID: 9533692 [PubMed - indexed for MEDLINE]
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